Package: RClinVarbitration
Type: Package
Title: Stream ClinVar XML into Relational DuckDB Tables
Version: 0.1.1
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
           email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "DuckDB Foundation", role = "cph",
           comment = "Bundled DuckDB C extension headers"),
    person(given = "Centre for Population Genomics", role = "cph",
           comment = "ClinVarbitration 2.2.11 decision-policy semantics")
    )
Description: Streams official 'ClinVar' VCV XML releases, including
        gzip inputs, into focused relational tables in 'DuckDB'. A
        package-owned native extension uses libxml2's forward reader to
        retain VCV variants, normalized alleles, RCV aggregates, SCV
        submissions, conditions, observations, citations, and
        attributable evidence text without loading the release into R.
        ClinVarbitration policy is a derived SQL layer over those
        retained source relations, with a separate direct reproducer
        for archived NCBI flat-file releases.
License: GPL (>= 2)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
Imports: DBI
Suggests: duckdb, knitr, rmarkdown, roxygen2, tinytest
VignetteBuilder: knitr
SystemRequirements: libxml2 (>= 2.9.0), zlib, pkg-config, C compiler;
        Rtools (Windows)
URL: https://github.com/RGenomicsETL/RClinVarbitration,
        https://rgenomicsetl.github.io/RClinVarbitration/
BugReports: https://github.com/RGenomicsETL/RClinVarbitration/issues
Config/pak/sysreqs: libxml2-dev pkg-config zlib1g-dev
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-07-21 20:31:49 UTC
RemoteUrl: https://github.com/RGenomicsETL/RClinVarbitration
RemoteRef: HEAD
RemoteSha: 1700ec9a53c3d9c350a24ced8c4a673207633382
NeedsCompilation: no
Packaged: 2026-07-21 21:33:17 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  DuckDB Foundation [cph] (Bundled DuckDB C extension headers),
  Centre for Population Genomics [cph] (ClinVarbitration 2.2.11
    decision-policy semantics)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>