Package: Rduckhts
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
        Extension
Version: 1.3.0.9000-0.1.0
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
    email = "sounkoutoure@gmail.com",
    role = c("aut", "cre")),
    person(given = "James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan, Andrew Whitwham,Thomas Keane , Robert M Davies", role = "ctb", comment = "Htslib Authors"),
    person(given = "Brent", family = "Pedersen", role = "cph", comment = "Mosdepth Original Author"),
    person(given = "Giulio", family = "Genovese", email = "giulio.genovese@gmail.com", role = "cph", comment = "Author of BCFTools munge,score,liftover plugins"),
    person(given = "Nicola", family = "Asuni", role = "cph", comment = "Author of the VariantKey and RegionKey C API"),
    person(given = "DuckDB C Extension API Authors", role = "ctb")
    )
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High
        Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB'
        C extension API <https://duckdb.org/docs/stable/clients/c/api>
        and its 'htslib' dependency are compiled from vendored sources
        during package installation. James K Bonfield and co-authors
        (2021) <doi:10.1093/gigascience/giab007>. VariantKey /
        RegionKey support follows Nicola Asuni (2018)
        <doi:10.1101/473744>.
License: GPL-3
Copyright: See inst/COPYRIGHT
Encoding: UTF-8
SystemRequirements: GNU make, cmake, zlib, libbz2, liblzma, libcurl,
        openssl (development headers)
Depends: R (>= 4.4.0)
Imports: DBI, duckdb, utils
Suggests: tinytest
RoxygenNote: 7.3.3
URL: https://github.com/RGenomicsETL/duckhts,
        https://rgenomicsetl.r-universe.dev/Rduckhts
BugReports: https://github.com/RGenomicsETL/duckhts/issues
Config/pak/sysreqs: cmake make libbz2-dev liblzma-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-06-20 12:56:10 UTC
RemoteUrl: https://github.com/RGenomicsETL/duckhts
RemoteRef: HEAD
RemoteSha: 122306d870b9e229ec90ae3ff9e91966c9c8850a
RemoteSubdir: r/Rduckhts
NeedsCompilation: no
Packaged: 2026-06-20 13:59:26 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
    Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] (Htslib
    Authors),
  Brent Pedersen [cph] (Mosdepth Original Author),
  Giulio Genovese [cph] (Author of BCFTools munge,score,liftover plugins),
  Nicola Asuni [cph] (Author of the VariantKey and RegionKey C API),
  DuckDB C Extension API Authors [ctb]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>