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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Rducksassy" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'Rducksassy: Approximate String Matching for ''DuckDB'''
version: 0.1.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Rducksassy
abstract: Builds and loads the 'ducksassy' extension for 'DuckDB', providing approximate
  DNA, IUPAC and ASCII string matching through the 'Sassy' SIMD kernels. Search scalar
  values, pattern panels and CRISPR guide targets from SQL. The matching method is
  described by Beeloo and Groot Koerkamp (2026) <https://doi.org/10.1093/bioinformatics/btag244>.
authors:
- family-names: Toure
  given-names: Sounkou Mahamane
  email: sounkoutoure@gmail.com
preferred-citation:
  type: manual
  title: 'Rducksassy: Approximate String Matching for DuckDB'
  authors:
  - family-names: Toure
    given-names: Sounkou Mahamane
    email: sounkoutoure@gmail.com
  year: '2026'
  notes: R package version 0.1.0
  url: https://github.com/RGenomicsETL/ducksassy
repository: https://rgenomicsetl.r-universe.dev
repository-code: https://github.com/RGenomicsETL/ducksassy
commit: 6ebfa4d9666069c3504243053c9a24b573e468f3
url: https://rgenomicsetl.github.io/ducksassy/
date-released: '2026-10-05'
contact:
- family-names: Toure
  given-names: Sounkou Mahamane
  email: sounkoutoure@gmail.com
references:
- type: article
  title: 'Sassy: fuzzy Searching DNA Sequences using SIMD'
  authors:
  - family-names: Beeloo
    given-names: Rick
  - family-names: Groot Koerkamp
    given-names: Ragnar
  journal: Bioinformatics
  year: '2026'
  doi: 10.1093/bioinformatics/btag244