Package: Rminibwa
Title: Native R Bindings and SIMD Dispatch for 'minibwa'
Version: 0.7.0-0.0.1.9000
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
      email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "Dana-Farber Cancer Institute", role = "cph",
      comment = "Copyright holder of upstream minibwa"),
    person(given = "Ilya", family = "Grebnov", role = "cph",
      comment = "libsais copyright holder"),
    person(given = "N. Jesper", family = "Larsson", role = "cph",
      comment = "QSufSort copyright holder"),
    person(given = "Wong", family = "Chi Kwong", role = "cph",
      comment = "BWT-SW/bwtgen copyright holder")
  )
Description: Provides native R bindings to the 'minibwa' genomic read
        aligner with raw-vector query input, external-pointer alignment
        batches, ALTREP column views, and an installed C API for
        downstream packages. The package builds staged Single
        Instruction Multiple Data ('SIMD') KSW backends, selects
        portable scalar, SSE4, or AVX2 code at runtime without global
        instruction-set compiler flags, and on native platforms links
        to the exact 'htslib' build supplied by 'Rduckhts' as its
        alignment-format dependency.
License: GPL (>= 2)
Depends: R (>= 4.4.0)
SystemRequirements: GNU make, zlib
Imports: Rduckhts (>= 1.5.1-0.1.1)
LinkingTo: RsimdDispatch (>= 0.1.2.9001)
Suggests: knitr, rmarkdown, roxygen2, Rtinycc, tinytest
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Additional_repositories: https://rgenomicsetl.r-universe.dev,
        https://sounkou-bioinfo.r-universe.dev
URL: https://github.com/RGenomicsETL/Rminibwa,
        https://rgenomicsetl.github.io/Rminibwa/
BugReports: https://github.com/RGenomicsETL/Rminibwa/issues
Config/roxygen2/version: 8.0.0
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-10-05 13:56:13 UTC
RemoteUrl: https://github.com/RGenomicsETL/Rminibwa
RemoteRef: HEAD
RemoteSha: 0e7d6072711847e4f1b281eda09cb2675ac16f03
NeedsCompilation: yes
Packaged: 2026-10-20 19:56:42 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Dana-Farber Cancer Institute [cph] (Copyright holder of upstream
    minibwa),
  Ilya Grebnov [cph] (libsais copyright holder),
  N. Jesper Larsson [cph] (QSufSort copyright holder),
  Wong Chi Kwong [cph] (BWT-SW/bwtgen copyright holder)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>