Package: Rpgen
Title: PLINK 2 Genotype Ingestion into File-Backed Storage
Version: 0.1.0
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure", email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "Christopher", family = "Chang", role = "cph", comment = "Author of the vendored pgenlib library and plink2 program"),
    person(given = "Shaun", family = "Purcell", role = "cph", comment = "Co-author of the vendored plink2 format-import closure"),
    person(given = "Eric", family = "Biggers", role = "cph", comment = "Author of included libdeflate library"),
    person(given = "Yann Collet", family = "", role = "cph", comment = "Author of included Zstd library"),
    person(given = "Meta Platforms, Inc.", role = "cph", comment = "Zstd library"),
    person(given = "Evan", family = "Nemerson", role = "cph", comment = "Author of included SIMDe library"),
    person(given = "Mutsuo", family = "Saito", role = "cph", comment = "Co-author of included SFMT library"),
    person(given = "Makoto", family = "Matsumoto", role = "cph", comment = "Co-author of included SFMT library")
    )
Description: Uses the 'PLINK 2' pgenlib library and its native
        importers (<https://github.com/chrchang/plink-ng>) to ingest
        PGEN, PLINK 1 BED, PED/MAP, TPED/TFAM, VCF/BCF, BGEN, Oxford
        GEN, HAPS/legend, EIGENSTRAT, and legacy dosage sources into
        bounded, file-backed 'Rfmalloc' layouts. Hardcalls, dosages,
        and phase are transferred as typed record panels, allowing the
        destination to choose a packed codec or full-precision storage
        without constructing a complete R matrix. The vendored native
        readers are also exposed through 'R_RegisterCCallable' for
        sibling packages.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.4.0), Rfmalloc
LinkingTo: Rfmalloc
Suggests: tinytest
Remotes: Rfmalloc=sounkou-bioinfo/Rfmalloc/packages/Rfmalloc
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/sounkou-bioinfo/Rfmalloc,
        https://sounkou-bioinfo.github.io/Rfmalloc/Rpgen/
BugReports: https://github.com/sounkou-bioinfo/Rfmalloc/issues
Config/pak/sysreqs: make
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-07-18 21:34:09 UTC
RemoteUrl: https://github.com/RGenomicsETL/Rfmalloc
RemoteRef: HEAD
RemoteSha: 6e05ad03613e89cab2f8bf8eb3a49d553d5a3bed
RemoteSubdir: packages/Rpgen
NeedsCompilation: yes
Packaged: 2026-07-21 19:32:17 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Christopher Chang [cph] (Author of the vendored pgenlib library and
    plink2 program),
  Shaun Purcell [cph] (Co-author of the vendored plink2 format-import
    closure),
  Eric Biggers [cph] (Author of included libdeflate library),
  Yann Collet [cph] (Author of included Zstd library),
  Meta Platforms, Inc. [cph] (Zstd library),
  Evan Nemerson [cph] (Author of included SIMDe library),
  Mutsuo Saito [cph] (Co-author of included SFMT library),
  Makoto Matsumoto [cph] (Co-author of included SFMT library)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>