Tables and coordinates | Opaque metadata | Source-population ancestry | Round trips
Package: Rtskit 0.0.0.9000
Sounkou Mahamane Toure
Rtskit: Native Access to Succinct Tree Sequences
Provides a native R interface to the 'tskit' C API for loading, inspecting, traversing, and writing succinct tree sequences. Tree sequences remain owned by native external pointers while typed R functions expose selected tables, opaque metadata, tree intervals, and declared source-population ancestry without a Python runtime.
Authors:
Rtskit_0.0.0.9000.tar.gz
Rtskit_0.0.0.9000.zip(r-4.7-x86_64)Rtskit_0.0.0.9000.zip(r-4.7-arm64)Rtskit_0.0.0.9000.zip(r-4.6-x86_64)Rtskit_0.0.0.9000.zip(r-4.6-arm64)Rtskit_0.0.0.9000.zip(r-4.5-x86_64)
Rtskit_0.0.0.9000.tgz(r-4.6-x86_64)Rtskit_0.0.0.9000.tgz(r-4.6-arm64)Rtskit_0.0.0.9000.tgz(r-4.5-x86_64)Rtskit_0.0.0.9000.tgz(r-4.5-arm64)
Rtskit_0.0.0.9000.tar.gz(r-4.7-arm64)Rtskit_0.0.0.9000.tar.gz(r-4.7-x86_64)Rtskit_0.0.0.9000.tar.gz(r-4.6-arm64)Rtskit_0.0.0.9000.tar.gz(r-4.6-x86_64)
Rtskit_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rtskit/json (API)
| # Install 'Rtskit' in R: |
| install.packages('Rtskit', repos = c('https://rgenomicsetl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rgenomicsetl/rtskit/issues
Pkgdown/docs site:https://rgenomicsetl.github.io
Last updated from:89812d004f. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 113 | ||
| linux-devel-x86_64 | OK | 128 | ||
| source / vignettes | OK | 182 | ||
| linux-release-arm64 | OK | 106 | ||
| linux-release-x86_64 | OK | 123 | ||
| macos-release-arm64 | OK | 102 | ||
| macos-release-x86_64 | OK | 173 | ||
| macos-oldrel-arm64 | OK | 94 | ||
| macos-oldrel-x86_64 | OK | 152 | ||
| windows-devel-arm64 | OK | 180 | ||
| windows-devel-x86_64 | OK | 123 | ||
| windows-release-arm64 | OK | 201 | ||
| windows-release-x86_64 | OK | 78 | ||
| windows-oldrel-x86_64 | OK | 96 | ||
| wasm-release | OK | 117 |
Exports:TreeSequencetskit_ancestry_intervalstskit_dumptskit_edgestskit_exampletskit_individualstskit_loadtskit_metadatatskit_metadata_schematskit_nodestskit_populationstskit_samplestskit_summarytskit_trees
Dependencies:S7
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A native succinct tree sequence | TreeSequence |
| Extract source-population ancestry intervals | tskit_ancestry_intervals |
| Write a succinct tree sequence | tskit_dump |
| Materialize the edge table | tskit_edges |
| Create deterministic example tree-sequence data | tskit_example |
| Materialize the individual table | tskit_individuals |
| Load a succinct tree sequence | tskit_load |
| Read opaque metadata bytes | tskit_metadata |
| Read an opaque metadata schema | tskit_metadata_schema |
| Materialize the node table | tskit_nodes |
| Materialize the population table | tskit_populations |
| Return sample node IDs | tskit_samples |
| Summarize a succinct tree sequence | tskit_summary |
| Traverse tree intervals | tskit_trees |
