Package: XCNV
Type: Package
Title: Copy Number Variant Annotation and Transparent Scoring
Version: 0.0.0.9000
Authors@R: c(
    person("Sounkou Mahamane", "Toure", email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person("Lu", "Zhang", role = "ctb"),
    person("Jing", "Shi", role = "ctb"),
    person("Jing", "Ouyang", role = "ctb"),
    person("Rui", "Zhang", role = "ctb"),
    person("Yan", "Tao", role = "ctb"),
    person("Dong", "Yuan", role = "ctb"),
    person("Cong", "Lv", role = "ctb"),
    person("Rui", "Wang", role = "ctb"),
    person("Bing", "Ning", role = "ctb"),
    person("Richard", "Roberts", role = "ctb"),
    person("William", "Tong", role = "ctb"),
    person("Zhi", "Liu", role = "ctb"),
    person("Tao", "Shi", role = "ctb")
    )
Description: Provides bedtools-free copy-number-variant annotation, a
        portable evaluator and bundled runtime-neutral form of the
        published X-CNV model of Zhang et al. (2021), and independently
        authored, provenance-first scoring under the ACMG and ClinGen
        2019 constitutional copy-number-variant standard. Large
        scientific annotation resources remain outside the package
        payload.
License: GPL (>= 2)
URL: https://rgenomicsetl.github.io/XCNV/,
        https://github.com/RGenomicsETL/XCNV,
        https://github.com/kbvstmd/XCNV
BugReports: https://github.com/RGenomicsETL/XCNV/issues
Depends: R (>= 4.1.0)
Imports: data.table, DBI, duckdb
Suggests: roxygen2, tinytest, knitr, rmarkdown
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
LazyData: true
LazyDataCompression: xz
Config/Needs/website: pkgdown
Config/pak/sysreqs: xz-utils
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-07-23 17:19:03 UTC
RemoteUrl: https://github.com/RGenomicsETL/XCNV
RemoteRef: HEAD
RemoteSha: dcd13ff68a3d09be0ed7622b4195a20116de18fd
NeedsCompilation: no
Packaged: 2026-07-23 18:54:31 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Lu Zhang [ctb],
  Jing Shi [ctb],
  Jing Ouyang [ctb],
  Rui Zhang [ctb],
  Yan Tao [ctb],
  Dong Yuan [ctb],
  Cong Lv [ctb],
  Rui Wang [ctb],
  Bing Ning [ctb],
  Richard Roberts [ctb],
  William Tong [ctb],
  Zhi Liu [ctb],
  Tao Shi [ctb]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>