{ "_id": "6ac9f2a4fe5cc25786e832cd", "Package": "Rdragmap", "Title": "An 'R' Wrapper for Portable 'DRAGMAP' Short-Read Alignment", "Version": "0.0.0.9000", "Authors@R": "c(\nperson(\ngiven = c(\"Sounkou\", \"Mahamane\"),\nfamily = \"Toure\",\nemail = \"sounkoutoure@gmail.com\",\nrole = c(\"aut\", \"cre\")\n),\nperson(\ngiven = \"Illumina, Inc.\",\nrole = c(\"ctb\", \"cph\"),\ncomment = \"DRAGMAP upstream implementation\"\n),\nperson(\ngiven = \"Mengyao\",\nfamily = \"Zhao\",\nrole = \"ctb\",\ncomment = \"Striped Smith-Waterman implementation\"\n),\nperson(\ngiven = \"Boston College\",\nrole = \"cph\",\ncomment = \"Striped Smith-Waterman copyright holder\"\n),\nperson(\ngiven = \"Evan\",\nfamily = \"Nemerson\",\nrole = \"cph\",\ncomment = \"SIMDe copyright holder\"\n),\nperson(\ngiven = \"Boost Software Authors\",\nrole = c(\"ctb\", \"cph\"),\ncomment = \"Boost C++ Libraries authors and copyright holders\"\n)\n)", "Description": "Builds the pinned in-tree 'DRAGMAP' hash-table generator\nand short-read aligner with a portable baseline and\nruntime-gated AVX2 on supported x86 processors. Stateless R\nfunctions build reference indexes and align FASTQ input through\none package-owned executable without searching 'PATH'. The same\nsource also compiles for AArch64, where 'SIMDe' maps the\nimported 128-bit vector operations to NEON.", "License": "GPL-3", "Encoding": "UTF-8", "Language": "en-US", "SystemRequirements": "A Unix-like system, GNU make, a C++17 compiler,\nzlib, bzip2, Boost Iostreams development files, and Boost\nProgram Options development files", "OS_type": "unix", "Additional_repositories": "https://rgenomicsetl.r-universe.dev", "URL": "https://github.com/RGenomicsETL/Rdragmap,\nhttps://rgenomicsetl.github.io/Rdragmap/", "BugReports": "https://github.com/RGenomicsETL/Rdragmap/issues", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.0.0", "Config/Needs/website": "pkgdown", "Collate": "'validation.R' 'results.R' 'process.R' 'executable.R'\n'reference.R' 'align.R' 'Rdragmap-package.R'", "Config/pak/sysreqs": "libboost-all-dev make zlib1g-dev", "Repository": "https://rgenomicsetl.r-universe.dev", "Date/Publication": "2026-08-10 23:14:41 UTC", "RemoteUrl": "https://github.com/RGenomicsETL/Rdragmap", "RemoteRef": "main", "RemoteSha": "02217084ea247ba90d4427077a12c51cf934ad12", "RemoteSubdir": "Rdragmap", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 07:48:06 UTC", "User": "root" }, "Author": "Sounkou Mahamane Toure [aut, cre],\nIllumina, Inc. [ctb, cph] (DRAGMAP upstream implementation),\nMengyao Zhao [ctb] (Striped Smith-Waterman implementation),\nBoston College [cph] (Striped Smith-Waterman copyright holder),\nEvan Nemerson [cph] (SIMDe copyright holder),\nBoost Software Authors [ctb, cph] (Boost C++ Libraries authors and\ncopyright holders)", "Maintainer": "Sounkou Mahamane Toure ", "_user": "rgenomicsetl", "_type": "src", "_file": "Rdragmap_0.0.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/6d350f2f30ff1c5b6702cca114f333b5d9096ac03ca67bf0be40b7aab16fa194", "_filesize": 1004739, "_sha256": "6d350f2f30ff1c5b6702cca114f333b5d9096ac03ca67bf0be40b7aab16fa194", "_expires": "2027-01-18T08:09:06.000Z", "_created": "2026-10-10T07:48:06.000Z", "_published": "2026-10-10T08:09:08.140Z", "_buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/38035522763", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114165700244, "time": 177, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11663577113" }, { "job": 114165700194, "time": 173, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11663546278" }, { "job": 114165700139, "time": 120, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11664417021" }, { "job": 114165700205, "time": 120, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11663853779" }, { "job": 114165069668, "time": 225, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11663960993" }, { "job": 114165700172, "time": 107, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 114165700154, "time": 38, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "" }, { "job": 114165700169, "time": 51, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "" }, { "job": 114165700187, "time": 54, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "" } ], "_upstream": "https://github.com/RGenomicsETL/Rdragmap", "_commit": { "id": "02217084ea247ba90d4427077a12c51cf934ad12", "author": "sounkou-bioinfo ", "committer": "sounkou-bioinfo ", "message": "Add reusable memory-mapped indexes\n\nExpose uncompressed index generation and validate the mmap alignment path before launch. Correct imported mmap deleters to retain each file's validated extent, with a numbered native patch and real teardown regression. Record the full-exome performance and 10M-pair threading evidence; gzip is not a worthwhile optimization target.\n", "time": 1786403681 }, "_maintainer": { "name": "Sounkou Mahamane Toure", "email": "sounkoutoure@gmail.com", "login": "sounkou-bioinfo", "mastodon": "@bioinfhotep@genomic.social", "description": "Sequences and Consequences.", "uuid": 56392505 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4.0", "role": "Depends" }, { "package": "processx", "version": ">= 3.8.0", "role": "Imports" }, { "package": "S7", "version": ">= 0.2.0", "role": "Imports" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "rgenomicsetl", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-32", "n": 19 }, { "week": "2026-33", "n": 9 } ], "_tags": [], "_topics": [ "allignment", "bioinformatics" ], "_stars": 0, "_contributors": [ { "user": "sounkou-bioinfo", "count": 28, "uuid": 56392505 }, { "user": "rizkg", "count": 9, "uuid": 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