{
  "_id": "6a604bc014e95619b75d8093",
  "Package": "rho.coding",
  "Type": "Package",
  "Title": "Rho Coding Tools",
  "Version": "0.0.1.9001",
  "Authors@R": "person(given = \"Sounkou Mahamane\", family = \"Toure\",\nemail = \"sounkoutoure@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Supplies coding-agent tools with explicit execution\nsemantics, including cross-platform Bash selection, process\nexecution in mirai workers, isolated R evaluation, opt-in\ncurrent-session R evaluation, and a locked JSONL implementation\nof the agent session-journal contract.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Remotes": [
    "RGenomicsETL/Rho/packages/rho.async",
    "RGenomicsETL/Rho/packages/rho.ai",
    "RGenomicsETL/Rho/packages/rho.agent",
    "RGenomicsETL/Rho/packages/rho.compute"
  ],
  "URL": "https://github.com/RGenomicsETL/Rho,\nhttps://rgenomicsetl.github.io/Rho/rho.coding/",
  "BugReports": "https://github.com/RGenomicsETL/Rho/issues",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libsecret-1-dev",
  "Repository": "https://rgenomicsetl.r-universe.dev",
  "Date/Publication": "2026-07-21 22:15:31 UTC",
  "RemoteUrl": "https://github.com/RGenomicsETL/Rho",
  "RemoteRef": "HEAD",
  "RemoteSha": "f3475cf000a379732d37cfb317754dec5ef2b4db",
  "RemoteSubdir": "packages/rho.coding",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-21 22:52:03 UTC",
    "User": "root"
  },
  "Author": "Sounkou Mahamane Toure [aut, cre]",
  "Maintainer": "Sounkou Mahamane Toure <sounkoutoure@gmail.com>",
  "_user": "rgenomicsetl",
  "_type": "src",
  "_file": "rho.coding_0.0.1.9001.tar.gz",
  "_fileid": "https://r2.ropensci.org/309031ca866444dc3439cfb18c1ea8bb6faba4a14d8614e6723e4d1365546a1a",
  "_filesize": 120235,
  "_sha256": "309031ca866444dc3439cfb18c1ea8bb6faba4a14d8614e6723e4d1365546a1a",
  "_expires": "2026-10-29T22:55:36.000Z",
  "_created": "2026-07-21T22:52:03.000Z",
  "_published": "2026-07-22T04:49:04.044Z",
  "_jobs": [
    {
      "job": 88833737794,
      "time": 200,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8518561139"
    },
    {
      "job": 88833738157,
      "time": 157,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8512763778"
    },
    {
      "job": 88833737743,
      "time": 111,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8518564753"
    },
    {
      "job": 88833737715,
      "time": 151,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8518572155"
    },
    {
      "job": 88833738050,
      "time": 252,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8512709467"
    },
    {
      "job": 88833738399,
      "time": 126,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8512753214"
    },
    {
      "job": 88833737721,
      "time": 95,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8518536645"
    },
    {
      "job": 88833737751,
      "time": 103,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8518538800"
    },
    {
      "job": 88833737769,
      "time": 105,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8518539617"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494",
  "_status": "success",
  "_upstream": "https://github.com/RGenomicsETL/Rho",
  "_commit": {
    "id": "f3475cf000a379732d37cfb317754dec5ef2b4db",
    "author": "sounkou-bioinfo <sounkoutoure@gmail.com>",
    "committer": "sounkou-bioinfo <sounkoutoure@gmail.com>",
    "message": "Require refreshed nanonext streaming fork\n",
    "time": 1784672131
  },
  "_maintainer": {
    "name": "Sounkou Mahamane Toure",
    "email": "sounkoutoure@gmail.com",
    "login": "sounkou-bioinfo",
    "mastodon": "@bioinfhotep@genomic.social",
    "description": "Sequences and Consequences.",
    "uuid": 56392505
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "S7",
      "role": "Imports"
    },
    {
      "package": "s7contract",
      "role": "Imports"
    },
    {
      "package": "rho.async",
      "version": ">= 0.0.1.9001",
      "role": "Imports"
    },
    {
      "package": "rho.ai",
      "version": ">= 0.0.1.9001",
      "role": "Imports"
    },
    {
      "package": "rho.agent",
      "version": ">= 0.0.1.9001",
      "role": "Imports"
    },
    {
      "package": "rho.compute",
      "version": ">= 0.0.1.9001",
      "role": "Imports"
    },
    {
      "package": "processx",
      "role": "Imports"
    },
    {
      "package": "yyjsonr",
      "role": "Imports"
    },
    {
      "package": "filelock",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "rgenomicsetl",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-29",
      "n": 33
    },
    {
      "week": "2026-30",
      "n": 4
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "sounkou-bioinfo",
      "count": 48,
      "uuid": 56392505
    }
  ],
  "_userbio": {
    "uuid": 252609706,
    "type": "organization",
    "name": "RGenomicsETL",
    "followers": 6,
    "description": "R Tools For Genomics Data Artisans"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rho.coding"
  },
  "_devurl": "https://github.com/rgenomicsetl/rho",
  "_pkgdown": "https://rgenomicsetl.github.io/Rho/rho.coding/",
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rho.coding.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "MemoryStore",
    "rho_apply_memory_edit",
    "rho_as_memory_link",
    "rho_as_memory_source",
    "rho_coding_tools",
    "rho_current_platform",
    "rho_decode_session_value",
    "rho_edit_memory",
    "rho_encode_session_value",
    "rho_evaluate_r",
    "rho_execute_memory_command",
    "rho_forget",
    "rho_in_memory_memory_store",
    "rho_json_semantic_adapter",
    "rho_json_session_codec",
    "rho_jsonl_session_journal",
    "rho_list_memory",
    "rho_memory_history",
    "rho_memory_link",
    "rho_memory_note",
    "rho_memory_now",
    "rho_memory_replacement",
    "rho_memory_slug",
    "rho_memory_source",
    "rho_memory_tool_result",
    "rho_memory_tools",
    "rho_r_evaluation_binding",
    "rho_r_evaluation_outcome",
    "rho_r_evaluator_overlap",
    "rho_r_evaluator_reason",
    "rho_r_tool_result",
    "rho_recall",
    "rho_remember",
    "rho_resolve_bash",
    "rho_run_shell",
    "rho_shell_outcome",
    "rho_shell_tool_result",
    "rho_tool_bash",
    "rho_tool_edit_memory",
    "rho_tool_forget",
    "rho_tool_memory_history",
    "rho_tool_r",
    "rho_tool_read",
    "rho_tool_recall",
    "rho_tool_remember",
    "rho_tool_write",
    "RhoArgumentShell",
    "RhoBashShell",
    "RhoCurrentSessionREvaluator",
    "RhoEditMemoryCommand",
    "RhoForgetMemoryCommand",
    "RhoInMemoryMemoryStore",
    "RhoJsonlSessionJournal",
    "RhoJsonlSessionJournalErrorValue",
    "RhoJsonSemanticAdapter",
    "RhoJsonSessionCodec",
    "RhoLegacyWslBashShell",
    "RhoMemoryAbsent",
    "RhoMemoryAlreadyExists",
    "RhoMemoryClock",
    "RhoMemoryCommand",
    "RhoMemoryConflict",
    "RhoMemoryContentRevision",
    "RhoMemoryEdit",
    "RhoMemoryEdited",
    "RhoMemoryEditUnsupported",
    "RhoMemoryErrorValue",
    "RhoMemoryForgotten",
    "RhoMemoryFound",
    "RhoMemoryHistory",
    "RhoMemoryHistoryCommand",
    "RhoMemoryIndex",
    "RhoMemoryLink",
    "RhoMemoryNote",
    "RhoMemoryNotFound",
    "RhoMemoryObservation",
    "RhoMemoryRemembered",
    "RhoMemoryReplacement",
    "RhoMemoryResult",
    "RhoMemorySource",
    "RhoMemoryStore",
    "RhoMiraiExpressionEvaluator",
    "RhoMiraiShellBackend",
    "RhoPlatform",
    "RhoRecallMemoryCommand",
    "RhoRememberMemoryCommand",
    "RhoREvaluationBinding",
    "RhoREvaluationFailure",
    "RhoREvaluationOutcome",
    "RhoREvaluationSuccess",
    "RhoREvaluator",
    "RhoRExpression",
    "RhoSessionCodecErrorValue",
    "RhoShellBackend",
    "RhoShellCompleted",
    "RhoShellConfig",
    "RhoShellFailure",
    "RhoShellOutcome",
    "RhoShellResolution",
    "RhoShellUnavailable",
    "RhoSystemMemoryClock",
    "RhoUnixPlatform",
    "RhoWindowsPlatform"
  ],
  "_help": [
    {
      "page": "rho_coding_contracts",
      "title": "Coding tools and their execution contracts",
      "topics": [
        "RhoArgumentShell",
        "RhoBashShell",
        "RhoCurrentSessionREvaluator",
        "RhoLegacyWslBashShell",
        "RhoMiraiExpressionEvaluator",
        "RhoMiraiShellBackend",
        "RhoPlatform",
        "RhoREvaluationBinding",
        "RhoREvaluationFailure",
        "RhoREvaluationOutcome",
        "RhoREvaluationSuccess",
        "RhoREvaluator",
        "RhoRExpression",
        "RhoShellBackend",
        "RhoShellCompleted",
        "RhoShellConfig",
        "RhoShellFailure",
        "RhoShellOutcome",
        "RhoShellResolution",
        "RhoShellUnavailable",
        "RhoUnixPlatform",
        "RhoWindowsPlatform",
        "rho_coding_contracts",
        "rho_coding_tools",
        "rho_current_platform",
        "rho_evaluate_r",
        "rho_resolve_bash",
        "rho_run_shell",
        "rho_r_evaluation_binding",
        "rho_r_evaluation_outcome",
        "rho_r_evaluator_overlap",
        "rho_r_evaluator_reason",
        "rho_r_tool_result",
        "rho_shell_outcome",
        "rho_shell_tool_result",
        "rho_tool_bash",
        "rho_tool_r",
        "rho_tool_read",
        "rho_tool_write"
      ]
    },
    {
      "page": "rho_coding_memory",
      "title": "Authored memory revisions and tools",
      "topics": [
        "MemoryStore",
        "RhoEditMemoryCommand",
        "RhoForgetMemoryCommand",
        "RhoInMemoryMemoryStore",
        "RhoMemoryAbsent",
        "RhoMemoryAlreadyExists",
        "RhoMemoryClock",
        "RhoMemoryCommand",
        "RhoMemoryConflict",
        "RhoMemoryContentRevision",
        "RhoMemoryEdit",
        "RhoMemoryEdited",
        "RhoMemoryEditUnsupported",
        "RhoMemoryErrorValue",
        "RhoMemoryForgotten",
        "RhoMemoryFound",
        "RhoMemoryHistory",
        "RhoMemoryHistoryCommand",
        "RhoMemoryIndex",
        "RhoMemoryLink",
        "RhoMemoryNote",
        "RhoMemoryNotFound",
        "RhoMemoryObservation",
        "RhoMemoryRemembered",
        "RhoMemoryReplacement",
        "RhoMemoryResult",
        "RhoMemorySource",
        "RhoMemoryStore",
        "RhoRecallMemoryCommand",
        "RhoRememberMemoryCommand",
        "RhoSystemMemoryClock",
        "rho_apply_memory_edit",
        "rho_as_memory_link",
        "rho_as_memory_source",
        "rho_coding_memory",
        "rho_edit_memory",
        "rho_execute_memory_command",
        "rho_forget",
        "rho_in_memory_memory_store",
        "rho_list_memory",
        "rho_memory_history",
        "rho_memory_link",
        "rho_memory_note",
        "rho_memory_now",
        "rho_memory_replacement",
        "rho_memory_slug",
        "rho_memory_source",
        "rho_memory_tools",
        "rho_memory_tool_result",
        "rho_recall",
        "rho_remember",
        "rho_tool_edit_memory",
        "rho_tool_forget",
        "rho_tool_memory_history",
        "rho_tool_recall",
        "rho_tool_remember"
      ]
    },
    {
      "page": "rho_coding_session_contracts",
      "title": "JSON session documents and the coding-host JSONL journal",
      "topics": [
        "RhoJsonlSessionJournal",
        "RhoJsonlSessionJournalErrorValue",
        "RhoJsonSemanticAdapter",
        "RhoJsonSessionCodec",
        "RhoSessionCodecErrorValue",
        "rho_coding_session_contracts",
        "rho_decode_session_value",
        "rho_encode_session_value",
        "rho_jsonl_session_journal",
        "rho_json_semantic_adapter",
        "rho_json_session_codec"
      ]
    }
  ],
  "_readme": "https://github.com/RGenomicsETL/Rho/raw/HEAD/packages/rho.coding/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "cli",
    "coro",
    "digest",
    "fastmap",
    "filelock",
    "keyring",
    "later",
    "lifecycle",
    "magrittr",
    "mirai",
    "nanonext",
    "otel",
    "processx",
    "promises",
    "ps",
    "R6",
    "Rcpp",
    "rho.agent",
    "rho.ai",
    "rho.async",
    "rho.compute",
    "rho.http",
    "rlang",
    "rmonocypher",
    "S7",
    "s7contract",
    "sys",
    "yaml",
    "yyjsonr"
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "rho.coding",
  "_universes": [
    "rgenomicsetl",
    "sounkou-bioinfo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:47:22.000Z",
      "distro": "resolute",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/f73950f27b5c06b6d11037af83637beb0fcf7e9fb77f0d48d29eae06ed05f7d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.1.9001",
      "date": "2026-07-21T22:54:20.000Z",
      "distro": "resolute",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/af4446fec6f3779b34bc8c34f19e7d8ca93304aa56103b17cbd0464256b08669",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:47:50.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/6631833c9d88e2fea87ede3adcfa11bcbe717f6e1b4421c6ade7cf2d8b9e2507",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:48:05.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/9b39f44ec97e0672b5d19befc6c0a5f7741247620558369904f769dedf6868d1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1.9001",
      "date": "2026-07-21T22:54:27.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/d8730c6f74ad446c788739ea654a65ebde6f27f90fffdfc95ada909871a27947",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:45:29.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/977ad86aac130e71a146794e7275c59d692f9bdef5b92aa524c7a6ecd4dc8910",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:45:44.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/f8f14afd2145d58914573f4ab4f6b3eecc42b14a7eabb5c42b94e639e48c3689",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.1.9001",
      "date": "2026-07-22T04:45:46.000Z",
      "commit": "f3475cf000a379732d37cfb317754dec5ef2b4db",
      "fileid": "https://r2.ropensci.org/20c4302523eea5059d8b15dc1ba2b8269bc67c14e99c60bfc9c03810e61e4053",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgenomicsetl/actions/runs/29874981494"
    }
  ]
}