Package: ducksemantics
Type: Package
Title: DuckDB-Native Semantic Graph Grounding
Version: 0.1.0
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
           email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "Human Phenotype Ontology", role = "cph",
           comment = "Bundled README fixture (CC BY 4.0)")
    )
Description: DuckDB-native semantic graph grounding over arbitrary
        concept graphs. The package owns graph schema creation, alias
        indexing, lexical mention grounding, transitive graph closure,
        'EmbeddingGemma' dense retrieval, 'ColBERT' late interaction,
        and 'BebeLM' judgment prompts. HPO, MONDO, ORPHANET, memory
        graphs, and run ledgers are graph sources, not special package
        APIs.
License: MIT + file LICENSE
URL: https://github.com/sounkou-bioinfo/ducksemantics,
        https://sounkou-bioinfo.github.io/ducksemantics/
BugReports: https://github.com/sounkou-bioinfo/ducksemantics/issues
Encoding: UTF-8
Depends: R (>= 4.3.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
Imports: DBI, S7, s7contract (>= 0.1.0), utils
Suggests: duckdb, jsonlite, Rbebelm (>= 0.3.6-0.1.0), tinytest
Remotes: sounkou-bioinfo/Rbebelm, sounkou-bioinfo/s7contract
Repository: https://rgenomicsetl.r-universe.dev
Date/Publication: 2026-07-21 13:18:18 UTC
RemoteUrl: https://github.com/RGenomicsETL/ducksemantics
RemoteRef: HEAD
RemoteSha: a21153a9471880fc434f517fc954dea99c7ba0b6
NeedsCompilation: no
Packaged: 2026-07-21 19:31:54 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Human Phenotype Ontology [cph] (Bundled README fixture (CC BY 4.0))
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>