Package: Rdragmap 0.0.0.9000

Sounkou Mahamane Toure

Rdragmap: An 'R' Wrapper for Portable 'DRAGMAP' Short-Read Alignment

Builds the pinned in-tree 'DRAGMAP' hash-table generator and short-read aligner with a portable baseline and runtime-gated AVX2 on supported x86 processors. Stateless R functions build reference indexes and align FASTQ input through one package-owned executable without searching 'PATH'. The same source also compiles for AArch64, where 'SIMDe' maps the imported 128-bit vector operations to NEON.

Authors:Sounkou Mahamane Toure [aut, cre], Illumina, Inc. [ctb, cph], Mengyao Zhao [ctb], Boston College [cph], Evan Nemerson [cph], Boost Software Authors [ctb, cph]

Rdragmap_0.0.0.9000.tar.gz
Rdragmap_0.0.0.9000.tgz(r-4.6-any)Rdragmap_0.0.0.9000.tgz(r-4.5-any)
Rdragmap_0.0.0.9000.tar.gz(r-4.7-any)Rdragmap_0.0.0.9000.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rdragmap/json (API)

# Install 'Rdragmap' in R:
install.packages('Rdragmap', repos = c('https://rgenomicsetl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgenomicsetl/rdragmap/issues

Pkgdown/docs site:https://rgenomicsetl.github.io

On CRAN:

Conda:

allignmentbioinformatics

2.60 score 16 exports 4 dependencies

Last updated from:02217084ea (on main). Checks:8 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK177
source / vignettesOK225
linux-releaseOK173
macos-releaseOK120
macos-oldrelOK120
windows-develOK38
windows-releaseOK54
windows-oldrelOK51
wasm-releaseFAIL107

Exports:rdragmap_alignrdragmap_build_indexrdragmap_contract_violationrdragmap_error_valuerdragmap_executablesrdragmap_indexrdragmap_is_errorRdragmapAlignmentResultRdragmapErrorValueRdragmapExecutablesRdragmapIndexRdragmapIndexBuildResultRdragmapInputErrorValueRdragmapOutputErrorValueRdragmapProcessErrorValueRdragmapRunResult

Dependencies:processxpsR6S7