Package: Rducksassy 0.1.0

Sounkou Mahamane Toure

Rducksassy: Approximate String Matching for 'DuckDB'

Builds and loads the 'ducksassy' extension for 'DuckDB', providing approximate DNA, IUPAC and ASCII string matching through the 'Sassy' SIMD kernels. Search scalar values, pattern panels and CRISPR guide targets from SQL. The matching method is described by Beeloo and Groot Koerkamp (2026) <doi:10.1093/bioinformatics/btag244>.

Authors:Sounkou Mahamane Toure [aut, cre], Rick Beeloo [ctb, cph], Ragnar Groot Koerkamp [ctb, cph], DuckDB Foundation [cph]

Rducksassy_0.1.0.tar.gz
Rducksassy_0.1.0.zip(r-4.7-x86_64)Rducksassy_0.1.0.zip(r-4.6-x86_64)Rducksassy_0.1.0.zip(r-4.5-x86_64)
Rducksassy_0.1.0.tgz(r-4.6-x86_64)Rducksassy_0.1.0.tgz(r-4.6-arm64)Rducksassy_0.1.0.tgz(r-4.5-x86_64)Rducksassy_0.1.0.tgz(r-4.5-arm64)
Rducksassy_0.1.0.tar.gz(r-4.7-arm64)Rducksassy_0.1.0.tar.gz(r-4.7-x86_64)Rducksassy_0.1.0.tar.gz(r-4.6-arm64)Rducksassy_0.1.0.tar.gz(r-4.6-x86_64)
Rducksassy_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rducksassy/json (API)

# Install 'Rducksassy' in R:
install.packages('Rducksassy', repos = c('https://rgenomicsetl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgenomicsetl/ducksassy/issues

Pkgdown/docs site:https://rgenomicsetl.github.io

On CRAN:

Conda:

duckdb-extensionsassysimdstring-matchingrustcargo

2.18 score 2 exports 2 dependencies

Last updated from:6ebfa4d966 (on main). Checks:13 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK127
linux-devel-x86_64OK159
source / vignettesOK246
linux-release-arm64OK121
linux-release-x86_64OK155
macos-release-arm64OK158
macos-release-x86_64OK447
macos-oldrel-arm64OK154
macos-oldrel-x86_64OK487
windows-devel-arm64FAIL209
windows-devel-x86_64OK211
windows-release-arm64FAIL174
windows-release-x86_64OK169
windows-oldrel-x86_64OK221
wasm-releaseOK124

Exports:rducksassy_connectrducksassy_load

Dependencies:DBIduckdb