Package: XCNV 0.0.0.9000

Sounkou Mahamane Toure

XCNV: Copy Number Variant Annotation and Transparent Scoring

Provides bedtools-free copy-number-variant annotation, a portable evaluator and bundled runtime-neutral form of the published X-CNV model of Zhang et al. (2021), and independently authored, provenance-first scoring under the ACMG and ClinGen 2019 constitutional copy-number-variant standard. Large scientific annotation resources remain outside the package payload.

Authors:Sounkou Mahamane Toure [aut, cre], Lu Zhang [ctb], Jing Shi [ctb], Jing Ouyang [ctb], Rui Zhang [ctb], Yan Tao [ctb], Dong Yuan [ctb], Cong Lv [ctb], Rui Wang [ctb], Bing Ning [ctb], Richard Roberts [ctb], William Tong [ctb], Zhi Liu [ctb], Tao Shi [ctb]

XCNV_0.0.0.9000.tar.gz
XCNV_0.0.0.9000.zip(r-4.7-any)XCNV_0.0.0.9000.zip(r-4.6-any)XCNV_0.0.0.9000.zip(r-4.5-any)
XCNV_0.0.0.9000.tgz(r-4.6-any)XCNV_0.0.0.9000.tgz(r-4.5-any)
XCNV_0.0.0.9000.tar.gz(r-4.7-any)XCNV_0.0.0.9000.tar.gz(r-4.6-any)
XCNV_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
XCNV/json (API)

# Install 'XCNV' in R:
install.packages('XCNV', repos = c('https://rgenomicsetl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgenomicsetl/xcnv/issues

Datasets:

On CRAN:

Conda:

1.70 score 19 exports 3 dependencies

Last updated from:dcd13ff68a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK175
source / vignettesOK179
linux-release-x86_64OK148
macos-release-arm64OK105
macos-oldrel-arm64OK81
windows-devel-x86_64OK74
windows-release-x86_64OK72
windows-oldrel-x86_64OK83
wasm-releaseOK124

Exports:annotate_cnvclassify_cnv_scorecnv_2019_criteriacnv_resource_sourcesderive_cnv_2019_evidenceload_xcnv_modelpredict_cnvread_cnvrun_xcnvscore_cnv_2019validate_cnvvalidate_xcnv_resourceswrite_xcnvxcnvxcnv_bundled_modelxcnv_fixture_resourcesxcnv_real_examplexcnv_resource_manifestxcnv_resources

Dependencies:data.tableDBIduckdb